There are questionable calls every game, and always will be. Football is too fast and too physical to get everything exactly right. But, none of these calls were that terrible. You can make a case all of them were correct, and probably make a case they were incorrect. Even the Jack recovery, if not blown down, would have been reviewed and it is possible they would say he was down by contact. He clearly was in contact with Lewis when they were going to the ground, so it would have had to have to been determined if there was contact when he actually took possession of the ball.
Hard to say that there were questionable calls in favor of Jax when there was only one penalty called against the Pats and it appeared every Jax infraction was penalized..